Welcome to the PyStack3D documentation !

User Guide

• Introduction
  • What is PyStack3D ?
  • Performance
  • Install
  • Tests and examples execution
  • Acknowledgements
  • Citations
• Getting started
  • Project directory organization
  • Workflow initialization
  • Workflow execution
  • Single .tif file processing
  • Outputs
  • Examples
• Parameters settings
  • General Parameters
  • Cropping
  • Background removal
  • Intensity rescaling
  • Registration
  • Destriping
  • Resampling
  • Cropping final
• Developers Notes
  • Issues
  • Pull Requests
  • TODO List

API References

• pystack3d