Index

_

__call__() (cdsaxs.residual.Residual method), [1]

__init__() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation method)

B

best_fit (cdsaxs.residual.Residual attribute), [1] best_fit_cmaes (cdsaxs.fitter.Fitter attribute), [1], [2], [3]

best_fitness (cdsaxs.fitter.Fitter attribute), [1] best_uncorr (cdsaxs.fitter.Fitter attribute), [1]

C

c (cdsaxs.residual.Residual attribute), [1] calculate_coefficients() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction method) calculate_form_factor() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction method) calculate_shift() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method), [1] calculate_ycoords() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method), [1] (cdsaxs.simulations.strong_castle.StrongCastleGeometry method) cdsaxs.fitter module, [1] cdsaxs.residual module, [1] cdsaxs.simulations module cdsaxs.simulations.base module

cdsaxs.simulations.stacked_trapezoid module cdsaxs.simulations.strong_castle module check_initial_guess() (cdsaxs.simulations.strong_castle.StrongCastleGeometry method) check_physical_validity() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method), [1] cmaes() (cdsaxs.fitter.Fitter method), [1], [2], [3] convert_to_dataframe() (cdsaxs.simulations.base.Geometry method) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method), [1] correct_form_factor_intensity() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction method) (cdsaxs.simulations.strong_castle.StrongCastleDiffraction method) corrections_dwi0bk() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction method)

D

do_stats() (cdsaxs.fitter.Fitter static method), [1]

E

exp_data (cdsaxs.fitter.Fitter attribute), [1]

F

Fitter (class in cdsaxs.fitter), [1] fix_fitness_mcmc() (cdsaxs.residual.Residual method), [1], [2], [3]

from_fitter (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry attribute) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute)

G

geometry (cdsaxs.simulations.base.Simulation property) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation property)

Geometry (class in cdsaxs.simulations.base) geometry() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation method)

I

initial_guess (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry attribute)

initial_guess_dataframe (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry attribute)

L

log_error() (cdsaxs.residual.Residual method), [1], [2], [3]

M

mcmc() (cdsaxs.fitter.Fitter method), [1] mcmc_bestfit_stats() (cdsaxs.fitter.Fitter method), [1] mdata (cdsaxs.residual.Residual attribute), [1] mfit_mode (cdsaxs.residual.Residual attribute), [1] minfitness_each_gen (cdsaxs.fitter.Fitter attribute), [1] module cdsaxs.fitter, [1] cdsaxs.residual, [1] cdsaxs.simulations cdsaxs.simulations.base cdsaxs.simulations.stacked_trapezoid cdsaxs.simulations.strong_castle

N

np (cdsaxs.fitter.Fitter attribute), [1]

P

plot_correlation() (cdsaxs.fitter.Fitter method), [1]

Q

qys (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute)

qzs (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute)

R

remove_fixed_params() (cdsaxs.simulations.strong_castle.StrongCastleGeometry method) rescale_fitparams() (cdsaxs.simulations.base.Geometry method) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method), [1]

Residual (class in cdsaxs.residual), [1]

S

Sampler (cdsaxs.fitter.Fitter attribute), [1] save_population() (cdsaxs.fitter.Fitter method), [1] set_best_fit_cmaes() (cdsaxs.fitter.Fitter method), [1] set_from_fitter() (cdsaxs.simulations.base.Simulation method) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation method), [1] set_initial_guess_dataframe() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry method) set_n1_n2() (cdsaxs.simulations.strong_castle.StrongCastleGeometry method) simulate_diffraction() (cdsaxs.simulations.base.Simulation method) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation method), [1]

Simulation (cdsaxs.fitter.Fitter attribute), [1] (cdsaxs.residual.Residual attribute), [1] (class in cdsaxs.simulations.base) StackedTrapezoidDiffraction (class in cdsaxs.simulations.stacked_trapezoid) StackedTrapezoidGeometry (class in cdsaxs.simulations.stacked_trapezoid) StackedTrapezoidSimulation (class in cdsaxs.simulations.stacked_trapezoid) StrongCastleDiffraction (class in cdsaxs.simulations.strong_castle) StrongCastleGeometry (class in cdsaxs.simulations.strong_castle) StrongCastleSimulation (class in cdsaxs.simulations.strong_castle) symmetric (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry attribute)

T

trapezoid_form_factor() (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction method)

TrapezoidDiffraction (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute) TrapezoidGeometry (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute)

X

xp (cdsaxs.residual.Residual attribute), [1] (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry attribute) (cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation attribute)