pystack3d package

Submodules

• pystack3d.bkg_removal module
  • init_args()
  • bkg_removal()
  • bkg_saving()
  • get_powers_2d()
  • powers_from_orders()
  • powers_from_expr()
  • expr_from_powers()
  • bkg_eval()
  • poly_basis_calculation()
  • bkg_calculation()
  • bkg_3d_from_slices()
  • plot()
• pystack3d.cropping module
  • cropping()
  • inds_from_area()
• pystack3d.destriping module
  • destriping()
  • destriping_from_wavelets()
• pystack3d.intensity_rescaling module
  • init_args()
  • intensity_rescaling()
  • eval()
  • cdf_calculation()
  • plot()
• pystack3d.intensity_rescaling_area module
  • init_args()
  • intensity_rescaling_area()
  • plot()
• pystack3d.registration_calculation module
  • init_args()
  • registration_calculation()
  • tmat_calculation()
  • plot()
  • registration_plot()
  • decomposition()
• pystack3d.registration_transformation module
  • init_args()
  • registration_transformation()
  • plot()
  • img_transformation()
  • constant_drift_removal()
  • running_avg_removal()
  • inner_rectangle()
  • find_max_inner_rectangle()
• pystack3d.resampling module
  • init_args()
  • resampling()
  • plot()
  • extract_z_from_filenames()
• pystack3d.stack3d module
  • Stack3d
    • Stack3d.pathdir
    • Stack3d.last_step_dir
    • Stack3d.fname_toml
    • Stack3d.params
    • Stack3d.channels()
    • Stack3d.process_dirname()
    • Stack3d.fnames()
    • Stack3d.shape()
    • Stack3d.create_partition()
    • Stack3d.eval()
    • Stack3d.cleanup()
    • Stack3d.concatenate_tif()
  • plot()
  • plot_stats_xy()
  • pbar_update()
• pystack3d.utils module
  • mask_creation()
  • outputs_saving()
  • get_tags()
  • save_tif()
  • img_reformatting()
  • imread_3d_skipping()
  • skipping()
  • division()
  • cumdot()
• pystack3d.utils_metadata_fibics module
  • params_from_metadata()
  • currents_from_metadata()
  • read_tags()
  • param_from_xml_ETroot()
• pystack3d.utils_multiprocessing module
  • shared_array_init()
  • worker_init()
  • np_from_array()
  • step_wrapper()
  • initialize_args()
  • collect_shared_array_parts()
  • get_complete_shared_array()

Module contents