Index

B

bkg_3d_from_slices() (in module pystack3d.bkg_removal) bkg_calculation() (in module pystack3d.bkg_removal)

bkg_eval() (in module pystack3d.bkg_removal) bkg_removal() (in module pystack3d.bkg_removal) bkg_saving() (in module pystack3d.bkg_removal)

C

cdf_calculation() (in module pystack3d.intensity_rescaling) channels() (pystack3d.stack3d.Stack3d method) cleanup() (pystack3d.stack3d.Stack3d method) collect_shared_array_parts() (in module pystack3d.utils_multiprocessing) concatenate_tif() (pystack3d.stack3d.Stack3d method)

constant_drift_removal() (in module pystack3d.registration_transformation) create_partition() (pystack3d.stack3d.Stack3d method) cropping() (in module pystack3d.cropping) cumdot() (in module pystack3d.utils) currents_from_metadata() (in module pystack3d.utils_metadata_fibics)

D

decomposition() (in module pystack3d.registration_calculation) destriping() (in module pystack3d.destriping)

destriping_from_wavelets() (in module pystack3d.destriping) division() (in module pystack3d.utils)

E

eval() (in module pystack3d.intensity_rescaling) (pystack3d.stack3d.Stack3d method)

expr_from_powers() (in module pystack3d.bkg_removal) extract_z_from_filenames() (in module pystack3d.resampling)

F

find_max_inner_rectangle() (in module pystack3d.registration_transformation)

fname_toml (pystack3d.stack3d.Stack3d attribute) fnames() (pystack3d.stack3d.Stack3d method)

G

get_complete_shared_array() (in module pystack3d.utils_multiprocessing)

get_powers_2d() (in module pystack3d.bkg_removal) get_tags() (in module pystack3d.utils)

I

img_reformatting() (in module pystack3d.utils) img_transformation() (in module pystack3d.registration_transformation) imread_3d_skipping() (in module pystack3d.utils) inds_from_area() (in module pystack3d.cropping) init_args() (in module pystack3d.bkg_removal) (in module pystack3d.intensity_rescaling) (in module pystack3d.intensity_rescaling_area) (in module pystack3d.registration_calculation) (in module pystack3d.registration_transformation) (in module pystack3d.resampling)

initialize_args() (in module pystack3d.utils_multiprocessing) inner_rectangle() (in module pystack3d.registration_transformation) intensity_rescaling() (in module pystack3d.intensity_rescaling) intensity_rescaling_area() (in module pystack3d.intensity_rescaling_area)

L

last_step_dir (pystack3d.stack3d.Stack3d attribute)

M

mask_creation() (in module pystack3d.utils) module pystack3d pystack3d.bkg_removal pystack3d.cropping pystack3d.destriping pystack3d.intensity_rescaling pystack3d.intensity_rescaling_area pystack3d.registration_calculation pystack3d.registration_transformation pystack3d.resampling pystack3d.stack3d pystack3d.utils pystack3d.utils_metadata_fibics pystack3d.utils_multiprocessing

N

np_from_array() (in module pystack3d.utils_multiprocessing)

O

outputs_saving() (in module pystack3d.utils)

P

param_from_xml_ETroot() (in module pystack3d.utils_metadata_fibics) params (pystack3d.stack3d.Stack3d attribute) params_from_metadata() (in module pystack3d.utils_metadata_fibics) pathdir (pystack3d.stack3d.Stack3d attribute) pbar_update() (in module pystack3d.stack3d) plot() (in module pystack3d.bkg_removal) (in module pystack3d.intensity_rescaling) (in module pystack3d.intensity_rescaling_area) (in module pystack3d.registration_calculation) (in module pystack3d.registration_transformation) (in module pystack3d.resampling) (in module pystack3d.stack3d) plot_stats_xy() (in module pystack3d.stack3d) poly_basis_calculation() (in module pystack3d.bkg_removal) powers_from_expr() (in module pystack3d.bkg_removal) powers_from_orders() (in module pystack3d.bkg_removal) process_dirname() (pystack3d.stack3d.Stack3d method) pystack3d module pystack3d.bkg_removal module

pystack3d.cropping module pystack3d.destriping module pystack3d.intensity_rescaling module pystack3d.intensity_rescaling_area module pystack3d.registration_calculation module pystack3d.registration_transformation module pystack3d.resampling module pystack3d.stack3d module pystack3d.utils module pystack3d.utils_metadata_fibics module pystack3d.utils_multiprocessing module

R

read_tags() (in module pystack3d.utils_metadata_fibics) registration_calculation() (in module pystack3d.registration_calculation) registration_plot() (in module pystack3d.registration_calculation)

registration_transformation() (in module pystack3d.registration_transformation) resampling() (in module pystack3d.resampling) running_avg_removal() (in module pystack3d.registration_transformation)

S

save_tif() (in module pystack3d.utils) shape() (pystack3d.stack3d.Stack3d method) shared_array_init() (in module pystack3d.utils_multiprocessing)

skipping() (in module pystack3d.utils) Stack3d (class in pystack3d.stack3d) step_wrapper() (in module pystack3d.utils_multiprocessing)

T

tmat_calculation() (in module pystack3d.registration_calculation)

W

worker_init() (in module pystack3d.utils_multiprocessing)